Regulation and function of antisense transcription in ...For most antisense transcription, the methods by which it is regulated and ... To
test this model, we focused on the stress-response gene. YKL151C ..... Two well-
characterized mammalian examples, Air and Kcnq1ot1, direct imprinting by
binding to .... Across our complete set of Saccharomyces transcriptomes, we
detected ...The Role of Transcription Factors at Antisense ... - Oxford JournalsMar 27, 2018 ... of RNA-Seq data into likely mRNA transcripts that are then used to create a ...
microprotein candidates and introduce a novel open-source .... We test the
influence of RNA-Seq transcriptome assembly on the ..... that is coded for by an
anti-sense transcript coming from the ..... in the mammalian proteome.Pervasive Antisense Transcription Is Evolutionarily ... - Oxford JournalsSep 27, 2018 ... We identified 315 novel differentially expressed transcripts in the transcriptome,
that have no homolog in any other species. ... author and source are credited. .....
Hybrid- ization of Earthworms using the sense and antisense probes was ......
worms (Eisenia fetida/andrei complex) from 28 ecotoxicological test ...Identification and analysis of functional elements in 1% of the human ...May 9, 2016 ... the downstream gene mRNA and the upstream antisense transcript. ... terized in
mammalian genomes (Pandorf et al. 2006 .... to the genome using Fisher's exact
test, excluding terms that .... ethanol, or galactose as the sole carbon source (Xu
et al. ...... Transcriptome-wide binding sites for components.RAN Translation Regulated by Muscleblind Proteins in Myotonic ...Key words: comparative transcriptomics, antisense transcription, yeast,
Saccharomyces cerevisiae, S. paradoxus. Introduction ... promoters (the source
of divergent transcription in yeast .... To test our hypotheses about the regulation
and function of ...... tion: an analysis of nuclear RNA metabolism in mammalian
cells.STRUCTURAL, FUNCTIONAL AND EVOLUTIONARY ... - OAKTrustJun 14, 2007 ... standing of both non-protein-coding transcripts and genomic ele- ments that
temporally and ... 'warehouse' for natural selection, potentially acting as the
source .... the appropriate null distribution of the test statistics. We term this ......
Antisense transcription in the mammalian transcriptome. Science 309 ...NOISeq: Differential Expression in RNA-seq - BioconductorSep 13, 2017 ... DM2-expanded CAGG antisense transcripts are elevated in. DM2 autopsy ....
experiments to test whether antisense RNAs and RAN proteins.Differentially-expressed, variant U1 snRNAs regulate gene ...of Sense-Antisense Transcripts in Mammals. ...... hypergeometric distribution (
Figure 3) was used to test for any overrepresented ...... of mRNA: a source of
protein variability. ... transcription in the mammalian transcriptome. ...... Abi1
ACCTTGCTAAGTTTATGACCAGCCTAAAACTTCTGGGG---
ATTGGGTATTATGTTTAAC.
